RDISK node
RDISK: a reconfigurable architecture for browsing genomic libraries
Research and innovation REF: IN89 V1
RDISK node
RDISK: a reconfigurable architecture for browsing genomic libraries

Author : Dominique LAVENIER

Publication date: August 10, 2008 | Lire en français

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3. RDISK node

Figure 5 shows the block diagram of an RDISK node. The heart of the system is based on a low-cost reconfigurable component, a Spartan II from Xilinx. Once configured, this component controls the various elements of the board, as well as filtering data during a query.

  • A microcontroller takes care of initializing the node on power-up, as well as reconfiguring the FPGA. More precisely, at start-up, the microcontroller downloads a bitstream from the hard disk, ensuring the node's minimal functionality: data reads and writes via the Ethernet connection. Once this task has been completed, it hands over to the FPGA and goes into stand-by mode. When a request is made to download a new bitstream, the microcontroller is reactivated by the FPGA, which tells it the number...

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